PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09200.4
Common NameLR48_Vigan09g105900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 193aa    MW: 21738.3 Da    PI: 9.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09200.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-202675356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Vang06g09200.4 26 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 75
                    8******9.**********955...5************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.48E-312484No hitNo description
SMARTSM003802.0E-332588IPR001471AP2/ERF domain
PROSITE profilePS5103222.0492582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-312583IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-222583IPR016177DNA-binding domain
PfamPF008473.2E-122675IPR001471AP2/ERF domain
PRINTSPR003671.8E-102637IPR001471AP2/ERF domain
PRINTSPR003671.8E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
LKSFNENWLS STRTQPMKYG GRGKLFKGVR QRHWGKWVAE IRLPRNRTRV WLGTFDTAED  60
AAIAYDTAAY ILRGEYAQLN FPDLKHVIQA NSLNGTTAAL VEAKLQAISQ GVSSHRKPTD  120
SPAGLSNKHT DENGKLKSTN DKNSTMKEWQ FDNTEKSKSI HHDISDVETF QLSRMPSLDM  180
DSIWDELLVS NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-212282263ATERF1
2gcc_A2e-212282263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513166.11e-140PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ08e-58ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A0L9VBG01e-142A0A0L9VBG0_PHAAN; Uncharacterized protein
STRINGGLYMA20G33890.11e-113(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-46ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]